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Chun-Hsi Huang PhD

TitleAssociate Professor
InstitutionUniversity of Connecticut
DepartmentComputer Science and Engineering
AddressUNIT 2155
Information Technologies Engineering Building
371 Fairfield Way
Phone860-486-5472
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    Collapse Bibliographic 
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Al-Okaily A, Huang CH. ET-Motif: Solving the Exact (l, d)-Planted Motif Problem Using Error Tree Structure. J Comput Biol. 2016 Jul; 23(7):615-23. PMID: 27152692.
      View in: PubMed
    2. Tran NT, Huang CH. MOTIFSIM: A web tool for detecting similarity in multiple DNA motif datasets. Biotechniques. 2015 Jul; 59(1):26-33. PMID: 26156781.
      View in: PubMed
    3. Tran NT, DeLuccia L, McDonald AF, Huang CH. Cross-disciplinary detection and analysis of network motifs. Bioinform Biol Insights. 2015; 9:49-60. PMID: 25983553; PMCID: PMC4403903.
    4. Lee C, Huang CH. LASAGNA-Search 2.0: integrated transcription factor binding site search and visualization in a browser. Bioinformatics. 2014 Jul 1; 30(13):1923-5. PMID: 24578403.
      View in: PubMed
    5. Tran NT, Huang CH. A survey of motif finding Web tools for detecting binding site motifs in ChIP-Seq data. Biol Direct. 2014; 9:4. PMID: 24555784; PMCID: PMC4022013.
    6. Tran NT, Huang CH. Gene Expression and Gene Ontology Enrichment Analysis for H3K4me3 and H3K4me1 in Mouse Liver and Mouse Embryonic Stem Cell Using ChIP-Seq and RNA-Seq. Gene Regul Syst Bio. 2014; 8:33-43. PMID: 24526835; PMCID: PMC3921077.
    7. Lee C, Huang CH. LASAGNA: a novel algorithm for transcription factor binding site alignment. BMC Bioinformatics. 2013; 14:108. PMID: 23522376; PMCID: PMC3747862.
    8. Lee C, Huang CH. LASAGNA-Search: an integrated web tool for transcription factor binding site search and visualization. Biotechniques. 2013 Mar; 54(3):141-53. PMID: 23599922.
      View in: PubMed
    9. Lee C, Huang CH. Searching for transcription factor binding sites in vector spaces. BMC Bioinformatics. 2012; 13:215. PMID: 23244338; PMCID: PMC3543194.
    10. Quader S, Huang CH. Effect of positional dependence and alignment strategy on modeling transcription factor binding sites. BMC Res Notes. 2012; 5:340. PMID: 22748199; PMCID: PMC3465234.
    11. Lee C, Nkounkou B, Huang CH. Comparison of LDA and SPRT on Clinical Dataset Classifications. Biomed Inform Insights. 2011 Apr 19; 4:1-7. PMID: 21949476.
      View in: PubMed
    12. Lee C, Huang CH. Toward optimizing the cache performance of suffix trees for sequence analysis algorithms suffix tree cache performance optimization. Adv Exp Med Biol. 2010; 680:411-7. PMID: 20865526.
      View in: PubMed
    13. Lee C, Abdool A, Huang CH. PCA-based population structure inference with generic clustering algorithms. BMC Bioinformatics. 2009; 10 Suppl 1:S73. PMID: 19208178; PMCID: PMC2648762.
    14. Yin L, Huang CH, Ni J. Clustering of gene expression data: performance and similarity analysis. BMC Bioinformatics. 2006; 7 Suppl 4:S19. PMID: 17217511; PMCID: PMC1780119.
    15. Lanza V, Huang CH. Advanced course for doctors as Departmental IT Network Administrators in anesthesia and intensive care units. J Clin Monit Comput. 2006 Oct; 20(5):333-9. PMID: 16964536.
      View in: PubMed
    16. Balla S, Thapar V, Verma S, Luong T, Faghri T, Huang CH, Rajasekaran S, del Campo JJ, Shinn JH, Mohler WA, Maciejewski MW, Gryk MR, Piccirillo B, Schiller SR, Schiller MR. Minimotif Miner: a tool for investigating protein function. Nat Methods. 2006 Mar; 3(3):175-7. PMID: 16489333.
      View in: PubMed
    17. Huang CH, Lanza V, Rajasekaran S, Dubitzky W. HealthGrid--bridging life science and information technology. J Clin Monit Comput. 2005 Oct; 19(4-5):259-62. PMID: 16328941.
      View in: PubMed
    18. Rajasekaran S, Balla S, Huang CH, Thapar V, Gryk M, Maciejewski M, Schiller M. High-performance exact algorithms for motif search. J Clin Monit Comput. 2005 Oct; 19(4-5):319-28. PMID: 16328946.
      View in: PubMed
    19. Rajasekaran S, Thapar V, Dave H, Huang CH. Randomized and parallel algorithms for distance matrix calculations in multiple sequence alignment. J Clin Monit Comput. 2005 Oct; 19(4-5):351-9. PMID: 16328949.
      View in: PubMed
    20. Rajasekaran S, Balla S, Huang CH. Exact algorithms for planted motif problems. J Comput Biol. 2005 Oct; 12(8):1117-28. PMID: 16241901.
      View in: PubMed
    21. Huang CH, Rajasekaran S. Parallel pattern identification in biological sequences on clusters. IEEE Trans Nanobioscience. 2003 Mar; 2(1):29-34. PMID: 15382420.
      View in: PubMed
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