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Ion Mandoiu PhD
Title Associate Professor
Institution University of Connecticut
Department Computer Science and Engineering
Address Information Technologies Engineering Building, UNIT 2155
371 Fairfield Way
Storrs, CT 06269
Telephone 860-486-3784
Fax 860-486-4817
Email
Publications
1. Huang Y, Khan M, Mandoiu II. Neuraminidase Subtyping of Avian Influenza Viruses with PrimerHunter-Designed Primers and Quadruplicate Primer Pools. PLoS One. 2013; 8(11):e81842.
  View in: PubMed
 
2. Menikarachchi LC, Hill DW, Hamdalla MA, Mandoiu II, Grant DF. In silico enzymatic synthesis of a 400,000 compound biochemical database for nontargeted metabolomics. J Chem Inf Model. 2013 Sep 23; 53(9):2483-92.
  View in: PubMed
 
3. Skums P, Mancuso N, Artyomenko A, Tork B, Mandoiu I, Khudyakov Y, Zelikovsky A. Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows. BMC Bioinformatics. 2013; 14 Suppl 9:S2.
  View in: PubMed
 
4. Chen J, Mandoiu I, Sunderraman R, Wang J, Zelikovsky A. Guest editors' introduction. BMC Bioinformatics. 2012; 13 Suppl 10:S1.
  View in: PubMed
 
5. Duan F, Simeone S, Wu R, Grady J, Mandoiu I, Srivastava PK. Area under the curve as a tool to measure kinetics of tumor growth in experimental animals. J Immunol Methods. 2012 Aug 31; 382(1-2):224-8.
  View in: PubMed
 
6. Astrovskaya I, Tork B, Mangul S, Westbrooks K, Mandoiu I, Balfe P, Zelikovsky A. Inferring viral quasispecies spectra from 454 pyrosequencing reads. BMC Bioinformatics. 2011; 12 Suppl 6:S1.
  View in: PubMed
 
7. Lee C, Mandoiu II, Nelson CE. Inferring ethnicity from mitochondrial DNA sequence. BMC Proc. 2011; 5 Suppl 2:S11.
  View in: PubMed
 
8. Nicolae M, Mangul S, Mandoiu II, Zelikovsky A. Estimation of alternative splicing isoform frequencies from RNA-Seq data. Algorithms Mol Biol. 2011; 6(1):9.
  View in: PubMed
 
9. Duitama J, Kennedy J, Dinakar S, Hernández Y, Wu Y, Mandoiu II. Linkage disequilibrium based genotype calling from low-coverage shotgun sequencing reads. BMC Bioinformatics. 2011; 12 Suppl 1:S53.
  View in: PubMed
 
10. Mancuso N, Tork B, Skums P, Ganova-Raeva L, Mandoiu I, Zelikovsky A. Reconstructing viral quasispecies from NGS amplicon reads. In Silico Biol. 2011-2012; 11(5-6):237-49.
  View in: PubMed
 
11. Mangul S, Caciula A, Glebova O, Mandoiu I, Zelikovsky A. Improved transcriptome quantification and reconstruction from RNA-Seq reads using partial annotations. In Silico Biol. 2011-2012; 11(5-6):251-61.
  View in: PubMed
 
12. Mandoiu I, Narasimhan G, Pan Y, Zhang Y. Guest Editors' introduction to the special section on bioinformatics research and applications. IEEE/ACM Trans Comput Biol Bioinform. 2010 Oct-Dec; 7(4):577-8.
  View in: PubMed
 
13. Jun J, Mandoiu II, Nelson CE. Identification of mammalian orthologs using local synteny. BMC Genomics. 2009; 10:630.
  View in: PubMed
 
14. Jun J, Ryvkin P, Hemphill E, Mandoiu I, Nelson C. The birth of new genes by RNA- and DNA-mediated duplication during mammalian evolution. J Comput Biol. 2009 Oct; 16(10):1429-44.
  View in: PubMed
 
15. Duitama J, Kumar DM, Hemphill E, Khan M, Mandoiu II, Nelson CE. PrimerHunter: a primer design tool for PCR-based virus subtype identification. Nucleic Acids Res. 2009 May; 37(8):2483-92.
  View in: PubMed
 
16. Kennedy J, Mandoiu I, Pasaniuc B. Genotype error detection using Hidden Markov Models of haplotype diversity. J Comput Biol. 2008 Nov; 15(9):1155-71.
  View in: PubMed
 
17. Mandoiu II, Pan Y, Zelikovsky A. Guest editors' introduction to the special section on bioinformatics research and applications. IEEE/ACM Trans Comput Biol Bioinform. 2008 Jul-Sep; 5(3):321-2.
  View in: PubMed
 
18. Gusev A, Mandoiu II, Pasaniuc B. Highly scalable genotype phasing by entropy minimization. IEEE/ACM Trans Comput Biol Bioinform. 2008 Apr-Jun; 5(2):252-61.
  View in: PubMed
 
19. Mandoiu II, Prajescu C. High-throughput SNP genotyping by SBE/SBH. IEEE Trans Nanobioscience. 2007 Mar; 6(1):28-35.
  View in: PubMed
 
20. Mandoiu II, Trinca D. Exact and approximation algorithms for DNA tag set design. J Comput Biol. 2006 Apr; 13(3):732-44.
  View in: PubMed
 
21. Pasaniuc B, Mandoiu I. Highly scalable genotype phasing by entropy minimization. Conf Proc IEEE Eng Med Biol Soc. 2006; 1:3482-6.
  View in: PubMed
 
22. DasGupta B, Konwar KM, Mandoiu II, Shvartsman AA. DNA-BAR: distinguisher selection for DNA barcoding. Bioinformatics. 2005 Aug 15; 21(16):3424-6.
  View in: PubMed
 
23. Dasgupta B, Konwar KM, Mandoiu II, Shvartsman AA. Highly scalable algorithms for robust string barcoding. Int J Bioinform Res Appl. 2005; 1(2):145-61.
  View in: PubMed
 
24. Kahng AB, Mandoiu II, Pevzner PA, Reda S, Zelikovsky AZ. Scalable heuristics for design of DNA probe arrays. J Comput Biol. 2004; 11(2-3):429-47.
  View in: PubMed
 
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Keyword
Last Name
Institution
    
 
 
 
Keywords   
Algorithms
Computational Biology
Genotype
Sequence Analysis, DNA
Polymorphism, Single Nucleotide
See all (78) keywords
Co-Authors  
Grady, James
Grant, David
Srivastava, Pramod
Wu, Rong
Wu, Yufeng
See all (5) people
Physical Neighbors  
Huang, Chun-Hsi
Cui, Jun-Hong
Khan, Mohammad
Rajasekaran, Sanguthevar
Wu, Yufeng
 
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