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1.
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Chen J, Mandoiu I, Sunderraman R, Wang J, Zelikovsky A. Guest editors' introduction. BMC Bioinformatics. 2012; 13 Suppl 10:S1.
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2.
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Duan F, Simeone S, Wu R, Grady J, Mandoiu I, Srivastava PK. Area under the curve as a tool to measure kinetics of tumor growth in experimental animals. J Immunol Methods. 2012 Aug 31; 382(1-2):224-8.
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3.
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Mancuso N, Tork B, Skums P, Ganova-Raeva L, Mandoiu I, Zelikovsky A. Reconstructing viral quasispecies from NGS amplicon reads. In Silico Biol. 2012 Jan 1; 11(5):237-49.
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4.
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Mangul S, Caciula A, Glebova O, Mandoiu I, Zelikovsky A. Improved transcriptome quantification and reconstruction from RNA-Seq reads using partial annotations. In Silico Biol. 2012 Jan 1; 11(5):251-61.
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5.
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Astrovskaya I, Tork B, Mangul S, Westbrooks K, Mandoiu I, Balfe P, Zelikovsky A. Inferring viral quasispecies spectra from 454 pyrosequencing reads. BMC Bioinformatics. 2011; 12 Suppl 6:S1.
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6.
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Lee C, Mandoiu II, Nelson CE. Inferring ethnicity from mitochondrial DNA sequence. BMC Proc. 2011; 5 Suppl 2:S11.
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7.
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Nicolae M, Mangul S, Mandoiu II, Zelikovsky A. Estimation of alternative splicing isoform frequencies from RNA-Seq data. Algorithms Mol Biol. 2011; 6(1):9.
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8.
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Duitama J, Kennedy J, Dinakar S, Hernández Y, Wu Y, Mandoiu II. Linkage disequilibrium based genotype calling from low-coverage shotgun sequencing reads. BMC Bioinformatics. 2011; 12 Suppl 1:S53.
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9.
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Mandoiu I, Narasimhan G, Pan Y, Zhang Y. Guest Editors' introduction to the special section on bioinformatics research and applications. IEEE/ACM Trans Comput Biol Bioinform. 2010 Oct-Dec; 7(4):577-8.
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10.
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Jun J, Mandoiu II, Nelson CE. Identification of mammalian orthologs using local synteny. BMC Genomics. 2009; 10:630.
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11.
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Jun J, Ryvkin P, Hemphill E, Mandoiu I, Nelson C. The birth of new genes by RNA- and DNA-mediated duplication during mammalian evolution. J Comput Biol. 2009 Oct; 16(10):1429-44.
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12.
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Duitama J, Kumar DM, Hemphill E, Khan M, Mandoiu II, Nelson CE. PrimerHunter: a primer design tool for PCR-based virus subtype identification. Nucleic Acids Res. 2009 May; 37(8):2483-92.
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13.
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Kennedy J, Mandoiu I, Pasaniuc B. Genotype error detection using Hidden Markov Models of haplotype diversity. J Comput Biol. 2008 Nov; 15(9):1155-71.
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14.
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Mandoiu II, Pan Y, Zelikovsky A. Guest editors' introduction to the special section on bioinformatics research and applications. IEEE/ACM Trans Comput Biol Bioinform. 2008 Jul-Sep; 5(3):321-2.
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15.
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Gusev A, Mandoiu II, Pasaniuc B. Highly scalable genotype phasing by entropy minimization. IEEE/ACM Trans Comput Biol Bioinform. 2008 Apr-Jun; 5(2):252-61.
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16.
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Mandoiu II, Prajescu C. High-throughput SNP genotyping by SBE/SBH. IEEE Trans Nanobioscience. 2007 Mar; 6(1):28-35.
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17.
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Mandoiu II, Trinca D. Exact and approximation algorithms for DNA tag set design. J Comput Biol. 2006 Apr; 13(3):732-44.
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18.
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Pasaniuc B, Mandoiu I. Highly scalable genotype phasing by entropy minimization. Conf Proc IEEE Eng Med Biol Soc. 2006; 1:3482-6.
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19.
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DasGupta B, Konwar KM, Mandoiu II, Shvartsman AA. DNA-BAR: distinguisher selection for DNA barcoding. Bioinformatics. 2005 Aug 15; 21(16):3424-6.
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20.
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Dasgupta B, Konwar KM, Mandoiu II, Shvartsman AA. Highly scalable algorithms for robust string barcoding. Int J Bioinform Res Appl. 2005; 1(2):145-61.
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21.
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Kahng AB, Mandoiu II, Pevzner PA, Reda S, Zelikovsky AZ. Scalable heuristics for design of DNA probe arrays. J Comput Biol. 2004; 11(2-3):429-47.
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