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Ion Mandoiu PhD
Title Associate Professor
Institution University of Connecticut
Department Computer Science and Engineering
Address Information Technologies Engineering Building, UNIT 2155
371 Fairfield Way
Storrs, CT 06269
Telephone 860-486-3784
Fax 860-486-4817
1. Huang Y, Khan M, Mandoiu II. Neuraminidase Subtyping of Avian Influenza Viruses with PrimerHunter-Designed Primers and Quadruplicate Primer Pools. PLoS One. 2013; 8(11):e81842.
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2. Menikarachchi LC, Hill DW, Hamdalla MA, Mandoiu II, Grant DF. In silico enzymatic synthesis of a 400,000 compound biochemical database for nontargeted metabolomics. J Chem Inf Model. 2013 Sep 23; 53(9):2483-92.
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3. Skums P, Mancuso N, Artyomenko A, Tork B, Mandoiu I, Khudyakov Y, Zelikovsky A. Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows. BMC Bioinformatics. 2013; 14 Suppl 9:S2.
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4. Chen J, Mandoiu I, Sunderraman R, Wang J, Zelikovsky A. Guest editors' introduction. BMC Bioinformatics. 2012; 13 Suppl 10:S1.
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5. Duan F, Simeone S, Wu R, Grady J, Mandoiu I, Srivastava PK. Area under the curve as a tool to measure kinetics of tumor growth in experimental animals. J Immunol Methods. 2012 Aug 31; 382(1-2):224-8.
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6. Astrovskaya I, Tork B, Mangul S, Westbrooks K, Mandoiu I, Balfe P, Zelikovsky A. Inferring viral quasispecies spectra from 454 pyrosequencing reads. BMC Bioinformatics. 2011; 12 Suppl 6:S1.
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7. Lee C, Mandoiu II, Nelson CE. Inferring ethnicity from mitochondrial DNA sequence. BMC Proc. 2011; 5 Suppl 2:S11.
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8. Nicolae M, Mangul S, Mandoiu II, Zelikovsky A. Estimation of alternative splicing isoform frequencies from RNA-Seq data. Algorithms Mol Biol. 2011; 6(1):9.
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9. Duitama J, Kennedy J, Dinakar S, Hernández Y, Wu Y, Mandoiu II. Linkage disequilibrium based genotype calling from low-coverage shotgun sequencing reads. BMC Bioinformatics. 2011; 12 Suppl 1:S53.
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10. Mancuso N, Tork B, Skums P, Ganova-Raeva L, Mandoiu I, Zelikovsky A. Reconstructing viral quasispecies from NGS amplicon reads. In Silico Biol. 2011-2012; 11(5-6):237-49.
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11. Mangul S, Caciula A, Glebova O, Mandoiu I, Zelikovsky A. Improved transcriptome quantification and reconstruction from RNA-Seq reads using partial annotations. In Silico Biol. 2011-2012; 11(5-6):251-61.
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12. Mandoiu I, Narasimhan G, Pan Y, Zhang Y. Guest Editors' introduction to the special section on bioinformatics research and applications. IEEE/ACM Trans Comput Biol Bioinform. 2010 Oct-Dec; 7(4):577-8.
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13. Jun J, Mandoiu II, Nelson CE. Identification of mammalian orthologs using local synteny. BMC Genomics. 2009; 10:630.
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14. Jun J, Ryvkin P, Hemphill E, Mandoiu I, Nelson C. The birth of new genes by RNA- and DNA-mediated duplication during mammalian evolution. J Comput Biol. 2009 Oct; 16(10):1429-44.
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15. Duitama J, Kumar DM, Hemphill E, Khan M, Mandoiu II, Nelson CE. PrimerHunter: a primer design tool for PCR-based virus subtype identification. Nucleic Acids Res. 2009 May; 37(8):2483-92.
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16. Kennedy J, Mandoiu I, Pasaniuc B. Genotype error detection using Hidden Markov Models of haplotype diversity. J Comput Biol. 2008 Nov; 15(9):1155-71.
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17. Mandoiu II, Pan Y, Zelikovsky A. Guest editors' introduction to the special section on bioinformatics research and applications. IEEE/ACM Trans Comput Biol Bioinform. 2008 Jul-Sep; 5(3):321-2.
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18. Gusev A, Mandoiu II, Pasaniuc B. Highly scalable genotype phasing by entropy minimization. IEEE/ACM Trans Comput Biol Bioinform. 2008 Apr-Jun; 5(2):252-61.
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19. Mandoiu II, Prajescu C. High-throughput SNP genotyping by SBE/SBH. IEEE Trans Nanobioscience. 2007 Mar; 6(1):28-35.
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20. Mandoiu II, Trinca D. Exact and approximation algorithms for DNA tag set design. J Comput Biol. 2006 Apr; 13(3):732-44.
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21. Pasaniuc B, Mandoiu I. Highly scalable genotype phasing by entropy minimization. Conf Proc IEEE Eng Med Biol Soc. 2006; 1:3482-6.
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22. DasGupta B, Konwar KM, Mandoiu II, Shvartsman AA. DNA-BAR: distinguisher selection for DNA barcoding. Bioinformatics. 2005 Aug 15; 21(16):3424-6.
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23. Dasgupta B, Konwar KM, Mandoiu II, Shvartsman AA. Highly scalable algorithms for robust string barcoding. Int J Bioinform Res Appl. 2005; 1(2):145-61.
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24. Kahng AB, Mandoiu II, Pevzner PA, Reda S, Zelikovsky AZ. Scalable heuristics for design of DNA probe arrays. J Comput Biol. 2004; 11(2-3):429-47.
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Last Name
Computational Biology
Sequence Analysis, DNA
Polymorphism, Single Nucleotide
See all (78) keywords
Grady, James
Grant, David
Srivastava, Pramod
Wu, Rong
Wu, Yufeng
See all (5) people
Physical Neighbors  
Bamis, Athanasios
Bi, Jinbo
Cui, Jun-Hong
Ammar, Reda
Rajasekaran, Sanguthevar
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